差分

このページの2つのバージョン間の差分を表示します。

--- kallisto [2017/05/03 00:46] – 作成 118.240.79.26
+++ kallisto [Unknown date] (現在) – 削除 - 外部編集 (Unknown date) 127.0.0.1
@@ 行 1: / 行 1: @@
-# kallistoインストール
-```
-[yoshitake.kazutoshi@m24 Bridger_r2014-12-01]$ cd /suikou/download/
-[yoshitake.kazutoshi@m24 download]$ wget https://github.com/pachterlab/kallisto/releases/download/v0.43.1/kallisto_linux-v0.43.1.tar.gz
---2017-05-03 09:42:57--  https://github.com/pachterlab/kallisto/releases/download/v0.43.1/kallisto_linux-v0.43.1.tar.gz
-github.com (github.com) をDNSに問いあわせています... 192.30.255.112, 192.30.255.113
-github.com (github.com)|192.30.255.112|:443 に接続しています... 接続しました。
-HTTP による接続要求を送信しました、応答を待っています... 302 Found
-場所: https://github-cloud.s3.amazonaws.com/releases/26562905/a2ba43ee-0d84-11e7-89b9-84264ba80200.gz?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAISTNZFOVBIJMK3TQ%2F20170503%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20170503T004258Z&X-Amz-Expires=300&X-Amz-Signature=25c5b7cc1d2579f292c6cda2364da8f79e242026f8225cbec2b2b196b68b915c&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dkallisto_linux-v0.43.1.tar.gz&response-content-type=application%2Foctet-stream [続く]
---2017-05-03 09:42:58--  https://github-cloud.s3.amazonaws.com/releases/26562905/a2ba43ee-0d84-11e7-89b9-84264ba80200.gz?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAISTNZFOVBIJMK3TQ%2F20170503%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20170503T004258Z&X-Amz-Expires=300&X-Amz-Signature=25c5b7cc1d2579f292c6cda2364da8f79e242026f8225cbec2b2b196b68b915c&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dkallisto_linux-v0.43.1.tar.gz&response-content-type=application%2Foctet-stream
-github-cloud.s3.amazonaws.com (github-cloud.s3.amazonaws.com) をDNSに問いあわせています... 54.231.72.115
-github-cloud.s3.amazonaws.com (github-cloud.s3.amazonaws.com)|54.231.72.115|:443 に接続しています... 接続しました。
-HTTP による接続要求を送信しました、応答を待っています... 200 OK
-長さ: 5829824 (5.6M) [application/octet-stream]
-`kallisto_linux-v0.43.1.tar.gz' に保存中
-%[========================================================================================>] 5,829,824   2.43MB/s 時間 2.3s
--05-03 09:43:01 (2.43 MB/s) - `kallisto_linux-v0.43.1.tar.gz' へ保存完了 [5829824/5829824]
-[yoshitake.kazutoshi@m24 download]$ tar zvxf kallisto_linux-v0.43.1.tar.gz
-kallisto_linux-v0.43.1/
-kallisto_linux-v0.43.1/license.txt
-kallisto_linux-v0.43.1/kallisto
-kallisto_linux-v0.43.1/test/
-kallisto_linux-v0.43.1/test/reads_2.fastq.gz
-kallisto_linux-v0.43.1/test/transcripts.fasta.gz
-kallisto_linux-v0.43.1/test/README.md
-kallisto_linux-v0.43.1/test/Snakefile
-kallisto_linux-v0.43.1/test/reads_1.fastq.gz
-kallisto_linux-v0.43.1/README.md
-[yoshitake.kazutoshi@m24 download]$ mv kallisto_linux-v0.43.1 /suikou/tool
-[yoshitake.kazutoshi@m24 download]$ link1 /suikou/tool
-[yoshitake.kazutoshi@m24 download]$ nano ~/.bashrc
-[yoshitake.kazutoshi@m24 download]$ source ~/.bashrc
-[yoshitake.kazutoshi@m24 download]$ /suikou/tool/kallisto_linux-v0.43.1/
--bash: /suikou/tool/kallisto_linux-v0.43.1/: ディレクトリです
-[yoshitake.kazutoshi@m24 download]$ /suikou/tool/kallisto_linux-v0.43.1/
-kallisto  test/
-[yoshitake.kazutoshi@m24 download]$ link1 /suikou/tool/kallisto_linux-v0.43.1/
-[yoshitake.kazutoshi@m24 download]$ kallisto
-kallisto 0.43.1
-Usage: kallisto <CMD> [arguments] ..
-Where <CMD> can be one of:
-    index         Builds a kallisto index
-    quant         Runs the quantification algorithm
-    pseudo        Runs the pseudoalignment step
-    h5dump        Converts HDF5-formatted results to plaintext
-    version       Prints version information
-    cite          Prints citation information
-Running kallisto <CMD> without arguments prints usage information for <CMD>
-```